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GENOME INFORMATICS

Bridge over troubled transcripts

Scallop2, a tool that enables accurate reference-guided transcriptome assembly, capitalizes on recent developments in short-read sequencing protocols for single-cell RNA sequencing by leveraging multi-end and paired-end information.

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Fig. 1: Scallop2 uses UMIs to infer additional information from splice graphs.

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Correspondence to Martin Hemberg.

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Parada, G.E., Hemberg, M. Bridge over troubled transcripts. Nat Comput Sci 2, 142–143 (2022). https://doi.org/10.1038/s43588-022-00219-y

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