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Taking metagenomics under the wings

This Genome Watch highlights how metagenomics can fill the knowledge gap of the wild avian gut microbiome and enable the early detection of antibiotic-resistant bacteria with implications for public health policy and conservation management.

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  1. Cao, J. et al. Metagenomic analysis reveals the microbiome and resistome in migratory birds. Microbiome 8, 26 (2020).

    CAS  Article  Google Scholar 

  2. Feng, Y. et al. Metagenome-assembled genomes and gene catalog from the chicken gut microbiome aid in deciphering antibiotic resistomes. Commun. Biol. 4, 1305 (2021).

    CAS  Article  Google Scholar 

  3. Miller, E. A. et al. Merging metagenomics and spatial epidemiology to understand the distribution of antimicrobial resistance genes from Enterobacteriaceae in wild owls. Appl. Environ. Microbiol. 86, e00571–20 (2020).

    CAS  Article  Google Scholar 

  4. Wang, W. et al. Comparative metagenomics of the gut microbiota in wild greylag geese (Anser anser) and ruddy shelducks (Tadorna ferruginea). Microbiologyopen 8, e00725 (2019).

    Article  Google Scholar 

  5. Zhang, Z. et al. Assessment of global health risk of antibiotic resistance genes. Nat. Commun. 13, 1553 (2022).

    CAS  Article  Google Scholar 

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Correspondence to Physilia Ying Shi Chua.

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Chua, P.Y.S., Rasmussen, J.A. Taking metagenomics under the wings. Nat Rev Microbiol (2022).

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